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Supported Applications


  • Description

    a platform-independent application written in Java and R that provides both a Graphical User Inteface (GUI) and a command-line interface to facilitate the quality control of alignment sequencing data and its derivatives like feature counts.

  • Usage

    To list all executables provided by Qualimap, run: $ biogrids-list qualimap Copy to clipboard
  • Usage Notes

    Qualimap GUI is started within the BioGrids environment with the command: qualimap.

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install qualimap Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    K. Okonechnikov, A. Conesa, and G.-A. F.. 2016. Qualimap 2: advanced multi-sample quality control for high-throughput sequencing data. Bioinformatics. 32(2): 292-294.

    • *Full citation information available through