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  • Description

    a powerful, extensible, and decentralized microbiome analysis package with a focus on data and analysis transparency. QIIME 2 enables researchers to start an analysis with raw DNA sequence data and finish with publication-quality figures and statistical results.

  • Usage

    To list all executables provided by QIIME 2, run: $ biogrids-list qiime-2 Copy to clipboard
  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install qiime-2 Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    J. G. Caporaso, J. Kuczynski, J. Stombaugh, K. Bittinger, F. D. Bushman, E. K. Costello, N. Fierer, A. G. Peña, J. K. Goodrich, J. I. Gordon, G. A. Huttley, S. T. Kelley, D. Knights, J. E. Koenig, R. E. Ley, C. A. Lozupone, D. McDonald, B. D. Muegge, M. Pirrung, J. Reeder, J. R. Sevinsky, P. J. Turnbaugh, W. A. Walters, J. Widmann, T. Yatsunenko, J. Zaneveld, and K. R.. 2010. QIIME allows analysis of high-throughput community sequencing data. Nature Methods. Nature Publishing Group.

    • *Full citation information available through

  • Citation Note

    QIIME 2 does not yet have its own citation. Please cite the main website (https://qiime2.org) and for now please cite the original QIIME 1 publication until QIIME 2 has its own publication.
  • Keywords

    Metagenomic Sequencing Analysis

  • Default Versions

    Linux 64:  2018.2 (3.2 GB)
    OS X INTEL:  2018.2 (2.7 GB)

  • Developers

    Greg Caporaso, Rideout Jai Ram, Rob Knight