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Pysam

  • Description

    a python module that makes it easy to read and manipulate genomic data sets. It is a lightweight wrapper of the htslib C-API; it provides facilities to read and write SAM/BAM/VCF/BCF/BED/GFF/GTF/FASTA/FASTQ files as well as access to the command line functionality of the SAMtools and BCFtools packages.

    Pysam is installed as a module within python.

  • Usage

    To list all executables provided by Pysam, run: $ biogrids-list pysam Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install pysam Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Citation Note

    Users of the program should cite the url https://github.com/pysam-developers/pysam
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