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PPanGGOLiN

  • Description

    a software suite used to create and manipulate prokaryotic pangenomes from a set of either genomic DNA sequences or provided genome annotations. It is designed to scale up to tens of thousands of genomes.

  • Usage

    To list all executables provided by PPanGGOLiN, run: $ biogrids-list ppanggolin Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install ppanggolin Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    G. Gautreau, A. Bazin, M. Gachet, R. Planel, L. Burlot, M. Dubois, A. Perrin, C. Médigue, A. Calteau, S. Cruveiller, C. Matias, C. Ambroise, E. P. C. Rocha, and D. Vallenet. 2020. PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph. PLoS computational biology. 16(3): e1007732.


    • *Full citation information available through

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