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Supported Applications


  • Description

    (POPulation Partitioning Using Nucleotide Kmers) Calculate core and accessory distances, cluster genomes, assign new genomes to clusters, make visualisations

  • Usage

    To list all executables provided by poppunk, run: $ biogrids-list poppunk Copy to clipboard
  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install poppunk Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    J. A. Lees, S. R. Harris, G. Tonkin-Hill, R. A. Gladstone, S. W. Lo, J. N. Weiser, J. Corander, S. D. Bentley, and N. J. Croucher. 2019. Fast and flexible bacterial genomic epidemiology with PopPUNK. Genome research. 29(2): 304-316.

    • *Full citation information available through