Supported Applications

Pindel

  • Description

    can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

  • Usage Notes

    Pindel is developed largely by Kai Ye: https://github.com/genome/pindel

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