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PhyloPhlAn

  • Description

    PhyloPhlAn is an integrated pipeline for large-scale phylogenetic profiling of genomes and metagenomes.

  • Usage

    To list all executables provided by PhyloPhlAn, run: $ biogrids-list phylophlan Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install phylophlan Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    F. Asnicar, A. M. Thomas, F. Beghini, C. Mengoni, S. Manara, P. Manghi, Q. Zhu, M. Bolzan, F. Cumbo, U. May, J. G. Sanders, M. Zolfo, E. Kopylova, E. Pasolli, R. Knight, S. Mirarab, C. Huttenhower, and N. Segata. 2020. Precise phylogenetic analysis of microbial isolates and genomes from metagenomes using PhyloPhlAn 3.0. Nature communications. 11(1): 2500.


    • *Full citation information available through

  • Keywords

    Phylogenomics

  • Default Versions

    Linux 64:  3.1.1 (1.3 GB)
    OS X INTEL:  3.1.1 (1.5 GB)

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