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Supported Applications


  • Description

    PHESANT - PHEnome Scan ANalysis Tool Run a phenome scan (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank.

    There are three components in this project:

    Running a phenome scan in UK Biobank Post-processing of results PHESANT-viz: Visualising the results

  • Usage

    To list all executables provided by PHESANT, run: $ biogrids-list phesant Copy to clipboard
  • Usage Notes

    BioGrids R version 3.5.1 required: source /programs/biogrids.shrc export R_M=3.5.1 # OSX export R_X=3.5.1 # Linux

    PHESANT-viz java visualization program aliased to phesant-viz:

    source /programs/biogrids.shrc phesant-viz

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install phesant Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    L. A. C. Millard, N. M. Davies, T. R. Gaunt, G. D. Smith, and T. K.. 2017. Software Application Profile: PHESANT: a tool for performing automated phenome scans in UK Biobank. Int J Epidemiol..

    • *Full citation information available through

  • Keywords


  • Default Versions

    Linux 64:  0.18 (7.1 MB)
    OS X INTEL:  0.18 (7.1 MB)