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panacus

  • Description

    panacus is a counting tool for pangenome graphs. It supports GFA files with P and W lines, but requires that the graph is blunt, i.e., nodes do not overlap and consequently, each link (L) points from the end of one segment (S) to the start of another.

  • Usage

    To list all executables provided by panacus, run: $ biogrids-list panacus Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install panacus Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    L. Parmigiani, E. Garrison, J. Stoye, T. Marschall, and D. Doerr. 2024. Panacus: fast and exact pangenome growth and core size estimation. bioRxiv : the preprint server for biology.


    • *Full citation information available through

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