(Open Reading Frame - Regression Algorithm for Translational Evaluation of Ribosome-protected footprints) comprises a series of scripts for coding sequence annotation based on ribosome profiling data.
ORF-RATER comprises several python scripts.
These scripts can be called as executables from within the BioGrids environment.
In addition, the version of python included with ORF-RATER can be called with the alias: python.orfrater
InstallationUse the following command to install this title with the CLI client:
$ biogrids-cli install orfrater
A. P. Fields, E. H. Rodriguez, M. Jovanovic, N. Stern-Ginossar, B. J. Haas, P. Mertins, R. Raychowdhury, N. Hacohen, S. A. Carr, N. T. Ingolia, A. Regev, and J. S. Weissman. 2015. A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation. Mol Cell. 60(5): 816-827.
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