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Supported Applications

ngsplot

  • Description

    Quick mining and visualization of NGS data by integrating genomic databases

  • Usage

    To list all executables provided by ngsplot, run: $ biogrids-list ngsplot Copy to clipboard

  • Usage Notes

    ngsplot in BioGrids provides the following callable executables:

    alter2bed.pl alt_reg_cufflinks combine_diff.pl coordinat.pl difflist2bed.pl get_difflist.pl install.db.tables.r ngs.plot.r ngsplotdb.py parse_diff.pl plotCorrGram.r remove.db.tables.r replot.r setTableDefaults.py

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install ngsplot Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    L. Shen, N. Shao, X. Liu, and E. Nestler. 2014. ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases. BMC genomics. 15: 284.


    • *Full citation information available through

  • Keywords

    Visualization

  • Default Versions

    Linux 64:  2.6.3 (958.9 MB)
    OS X INTEL:  2.6.3 (843.7 MB)

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