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Supported Applications

Nextstrain

  • Description

    real-time tracking of pathogen evolution.

  • Usage

    To list all executables provided by Nextstrain, run: $ biogrids-list nextstrain Copy to clipboard

  • Usage Notes

    BioGrids installation of Nextstrain provides the following executables:

    nextalign

    nextstrain

    auspice

    augur

    python.nextstrain

    snakemake.nextstrain

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install nextstrain Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    J. Hadfield, C. Megill, S. M. Bell, J. Huddleston, B. Potter, C. Callender, P. Sagulenko, T. Bedford, and R. A. Neher. 2018. Nextstrain: real-time tracking of pathogen evolution. Bioinformatics. 34(23): 4121-4123.


    • *Full citation information available through

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