Supported Applications

nextclade

  • Description

    SARS-CoV-2 genome clade assignment, mutation calling, and sequence quality checks

  • Usage Notes

    NOTE: nextclade_cli no longer includes default data, but rather can download its reference datasets as needed. For instructions on installing the latest data see: https://docs.nextstrain.org/projects/nextclade/en/stable/user/nextclade-cli.html#

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install nextclade Copy to clipboard
  • Primary Citation*

    J. Hadfield, C. Megill, S. M. Bell, J. Huddleston, B. Potter, C. Callender, P. Sagulenko, T. Bedford, and R. A. Neher. 2018. Nextstrain: real-time tracking of pathogen evolution. Bioinformatics (Oxford, England). 34(23): 4121-4123.


    • *Full citation information available through

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