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Supported Applications


  • Description

    SARS-CoV-2 genome clade assignment, mutation calling, and sequence quality checks

  • Usage

    To list all executables provided by nextclade, run: $ biogrids-list nextclade Copy to clipboard
  • Usage Notes

    NOTE: nextclade_cli no longer includes default data, but rather can download its reference datasets as needed. For instructions on installing the latest data see: https://docs.nextstrain.org/projects/nextclade/en/stable/user/nextclade-cli.html#

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install nextclade Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    J. Hadfield, C. Megill, S. M. Bell, J. Huddleston, B. Potter, C. Callender, P. Sagulenko, T. Bedford, and R. A. Neher. 2018. Nextstrain: real-time tracking of pathogen evolution. Bioinformatics (Oxford, England). 34(23): 4121-4123.

    • *Full citation information available through

  • Keywords

    Metagenomic Sequencing Analysis

  • Default Versions

    Linux 64:  2.3.0 (7.5 MB)
    OS X INTEL:  2.3.0 (8.3 MB)

  • Other Versions

      Linux 64:

      1.4.0 (8.3 MB)
    • OS X INTEL:

      1.4.0 (3.3 MB)