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MMTF-python

  • Description

    (Macromolecular Transmission Format python) is the macromolecular transmission format (MMTF) binary encoding of biological structures.

    This title holds the Python API encoding and decoding libraries.

    The mmtf-python module is available in BioGrids python 3.6.5.

    To use this version of python set the environment variable after sourcing /programs/biogrids.shrc:

    export PYTHON_X=3.6.5 (Linux)

    export PYTHON_M=3.6.5 (OSX)

    Alternatively, add this env variable to ~/.sbgrid.conf

    See https://biogrids.org/wiki/versions for details.

  • Usage

    To list all executables provided by MMTF-python, run: $ biogrids-list mmtf-python Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install mmtf-python Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    A. R. Bradley, A. S. Rose, A. Pavelka, Y. Valasatava, J. M. Duarte, A. Prlić, and R. PW.. 2017. MMTF-An efficient file format for the transmission, visualization, and analysis of macromolecular structures. PLoS Comput Biol.. 13(6): e1005575.


    • *Full citation information available through

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