Supported Applications

miniasm

Description

Miniasm is a very fast OLC-based de novo assembler for noisy long reads. It takes all-vs-all read self-mappings (typically by minimap) as input and outputs an assembly graph in the GFA format. Different from mainstream assemblers, miniasm does not have a consensus step. It simply concatenates pieces of read sequences to generate the final unitig sequences. Thus the per-base error rate is similar to the raw input reads.
Usage
To list all executables provided by miniasm, run: $ biogrids-list miniasm
Installation
Use the following command to install this title with the CLI client: $ biogrids-cli install miniasm Available operating systems: Linux 64, OS X INTEL

Keywords

Genome Assembly, High-throughput sequencing
Default Versions

Linux 64: 0.3_r179 (399.8 KB)
OS X INTEL: 0.3_r179 (189.1 KB)