MethylDackel will process a coordinate-sorted and indexed BAM or CRAM file containing some form of BS-seq alignments and extract per-base methylation metrics from them. MethylDackel requires an indexed fasta file containing the reference genome as well.
Usage: MethylDackel --help
InstallationUse the following command to install this title with the CLI client:
$ biogrids-cli install methyldackelAvailable operating systems: Linux 64, OS X INTEL
Linux 64:0.4.0 (1.4 MB)
OS X INTEL:0.4.0 (1.1 MB)