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megadepth

  • Description

    Megadepth is an efficient tool for extracting coverage related information from RNA and DNA-seq BAM and BigWig files.

  • Usage

    To list all executables provided by megadepth, run: $ biogrids-list megadepth Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install megadepth Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    C. Wilks, O. Ahmed, D. N. Baker, D. Zhang, L. Collado-Torres, and B. Langmead. 2021. Megadepth: efficient coverage quantification for BigWigs and BAMs. Bioinformatics (Oxford, England). 37(18): 3014-3016.


    • *Full citation information available through

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