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MAPseq

  • Description

    a set of fast and accurate sequence read classification tools designed to assign taxonomy and OTU classifications to ribosomal RNA sequences. This is done by using a reference set of full-length ribosomal RNA sequences for which known taxonomies are known, and for which a set of high quality OTU clusters has been previously generated. For each read, the best guess and corresponding confidence in the assignment is shown at each taxonomic and OTU level.

  • Usage

    To list all executables provided by MAPseq, run: $ biogrids-list mapseq Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install mapseq Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    J. F. M. Rodrigues, T. S. B. Schmidt, J. Tackmann, and v. M. C.. 2017. MAPseq: highly efficient k-mer search with confidence estimates, for rRNA sequence analysis. Bioinformatics. 33(23): 3808-3810.


    • *Full citation information available through

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