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Supported Applications


  • Description

    is a tool for digital spoligotyping of MTB strains from Illumina read data.

  • Usage

    To list all executables provided by lorikeet, run: $ biogrids-list lorikeet Copy to clipboard
  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install lorikeet Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    K. A. Cohen, T. Abeel, A. M. McGuire, C. A. Desjardins, Munsamy V, T. P. Shea, B. J. Walker, N. Bantubani, D. V. Almeida, L. Alvarado, S. B. Chapman, N. R. Mvelase, E. Y. Duffy, M. G. Fitzgerald, P. Govender, S. Gujja, S. Hamilton, C. Howarth, J. D. Larimer, K. Maharaj, M. D. Pearson, M. E. Priest, Q. Zeng, N. Padayatchi, J. Grosset, S. K. Young, J. Wortman, K. P. Mlisana, M. R. O'Donnell, B. W. Birren, W. R. Bishai, A. S. Pym, and E. AM.. 2015. Evolution of Extensively Drug-Resistant Tuberculosis over Four Decades: Whole Genome Sequencing and Dating Analysis of Mycobacterium tuberculosis Isolates from KwaZulu-Natal. PLoS Med. 12(9): e1001880.

    • *Full citation information available through