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Supported Applications

Longshot

  • Description

    a variant calling tool for diploid genomes using long error prone reads such as Pacific Biosciences (PacBio) SMRT and Oxford Nanopore Technologies (ONT).

  • Usage

    To list all executables provided by Longshot, run: $ biogrids-list longshot Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install longshot Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    P. Edge and V. Bansal. 2019. Longshot enables accurate variant calling in diploid genomes from single-molecule long read sequencing. Nat Commun. 10(1): 4660.


    • *Full citation information available through

  • Keywords

    Variant Analysis

  • Default Versions

    Linux 64:  0.4.5 (9.4 MB)
    OS X INTEL:  0.4.1 (2.5 MB)

  • Other Versions

      Linux 64:

      0.4.1 (6.3 MB)

    • OS X INTEL:

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