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Supported Applications

LongReadSum

  • Description

    LongReadSum supports FASTA, FASTQ, BAM, FAST5, and sequencing_summary.txt file formats for quick generation of QC data in HTML and text format.

  • Usage

    To list all executables provided by LongReadSum, run: $ biogrids-list longreadsum Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install longreadsum Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Citation Note

    Please cite the preprint below if you use our tool:


    Perdomo, J. E., Ahsan, M. U., Liu, Q., Fang, L. & Wang, K. LongReadSum: A fast and flexible quality control and signal summarization tool for long-read sequencing data. bioRxiv, 2024.2008.2005.606643, doi:10.1101/2024.08.05.606643 (2024).

  • Keywords

    Read Quality Control

  • Default Versions

    Linux 64:  1.3.1 (379.2 MB)
    OS X INTEL:  1.3.1 (287.2 MB)

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