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leafcutter

  • Description

    Leafcutter quantifies RNA splicing variation using short-read RNA-seq data.

  • Usage

    To list all executables provided by leafcutter, run: $ biogrids-list leafcutter Copy to clipboard

  • Usage Notes

    BioGrids leafcutter provides its own R and python distributions. These can be called with:

    R.leafcutter python.leafcutter

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install leafcutter Copy to clipboard Available operating systems: Linux 64

  • Primary Citation*

    Y. I. Li, D. A. Knowles, J. Humphrey, A. N. Barbeira, S. P. Dickinson, H. K. Im, and J. K. Pritchard. 2018. Annotation-free quantification of RNA splicing using LeafCutter. Nature genetics. 50(1): 151-158.


    • *Full citation information available through

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