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kma

  • Description

    implements a method designed to map raw reads directly against redundant databases, in an ultra-fast manner using seed and extend. KMA is particulary good at aligning high quality reads against highly redundant databases, where unique matches often does not exist. It works for long low quality reads as well, such as those from Nanopore. Non-unique matches are resolved using the "ConClave" sorting scheme, and a consensus sequence are outputtet in addition to other common attributes, based on our users demands.

  • Usage

    To list all executables provided by kma, run: $ biogrids-list kma Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install kma Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    C. PTLC, F. M. Aarestrup, and L. O.. 2018. Rapid and precise alignment of raw reads against redundant databases with KMA. BMC Bioinformatics. 19(1): 307.


    • *Full citation information available through

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