Supported Applications

Jellyfish

  • Description

    a tool for fast, memory-efficient counting of k-mers in DNA. A k-mer is a substring of length k, and counting the occurrences of all such substrings is a central step in many analyses of DNA sequence. JELLYFISH can count k-mers quickly by using an efficient encoding of a hash table and by exploiting the "compare-and-swap" CPU instruction to increase parallelism.

  • Keywords

    High-throughput sequencing

  • Default Versions

    Linux 64:  2.2.7
    OS X INTEL:  2.2.6

  • Other Available Versions

      Linux 64:

      2.2.9
  • Developers

    Guillaume Marçais, Carl Kingsford.
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