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ivar

  • Description

    is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

  • Usage

    To list all executables provided by ivar, run: $ biogrids-list ivar Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install ivar Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    N. D. Grubaugh, K. Gangavarapu, J. Quick, N. L. Matteson, J. G. D. Jesus, B. J. Main, A. L. Tan, L. M. Paul, D. E. Brackney, S. Grewal, N. Gurfield, K. K. A. V. Rompay, S. Isern, S. F. Michael, L. L. Coffey, N. J. Loman, and K. G. Andersen. 2019. An amplicon-based sequencing framework for accurately measuring intrahost virus diversity using PrimalSeq and iVar. Genome biology. 20(1): 8.


    • *Full citation information available through

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