Supported Applications


  • Description

    (INFERence of RNA ALignment) searches DNA sequence databases for RNA structure and sequence similarities and uses a special case of profile stochastic context-free grammars called covariance models (CMs). In many cases It is more capable of identifying RNA homologs that conserve their secondary structure more than their primary sequence.

  • Primary Citation*

    E. P. Nawrocki and S. R. Eddy. 2013. Infernal 1.1: 100-fold faster RNA homology searches. Bioinformatics. 29(22): 2933-2935.

    • *Full citation information available through