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immunarch

  • Description

    is an R package for fast, comprehensive analysis of Adaptive Immune Receptor Repertoire (AIRR) data, providing tools to load, explore, and quantify immune repertoires from bulk and single-cell V(D)J sequencing.

  • Usage

    To list all executables provided by immunarch, run: $ biogrids-list immunarch Copy to clipboard

  • Usage Notes

    BioGrids curated immunarch is provided as a self contained R environment with the immunarch package installed.

    To use this package call R and RScript with aliases:

    R.immunarch

    Rscript.immunarch

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install immunarch Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Citation Note

    ImmunoMind Team. (2019). immunarch: An R Package for Painless Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires. Zenodo. http://doi.org/10.5281/zenodo.3367200

  • Default Versions

    Linux 64:  0.10.3 (1.8 GB)
    OS X INTEL:  0.10.3 (1.4 GB)

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