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  • Description

    is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data (typically millions of short DNA/RNA reads).

  • Usage

    To list all executables provided by HUMAnN2, run: $ biogrids-list humann2 Copy to clipboard
  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install humann2 Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    E. A. Franzosa, L. J. McIver, G. Rahnavard, L. R. Thompson, M. Schirmer, G. Weingart, K. S. Lipson, R. Knight, J. G. Caporaso, N. Segata, and C. Huttenhower. 2018. Species-level functional profiling of metagenomes and metatranscriptomes. Nat Methods. 15(11): 962-968.

    • *Full citation information available through