Supported Applications


  • Description

    is a pipeline for efficiently and accurately profiling the presence/absence and abundance of microbial pathways in a community from metagenomic or metatranscriptomic sequencing data (typically millions of short DNA/RNA reads).

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids install humann2 Copy to clipboard
  • Primary Citation*

    F. EA*, M. LJ*, G. Rahnavard, L. R. Thompson, M. Schirmer, G. Weingart, K. S. Lipson, R. Knight, J. G. Caporaso, N. Segata, and H. C.. 2018. Species-level functional profiling of metagenomes and metatranscriptomes. Nat Methods. 15(11): 962-968.

    • *Full citation information available through