Supported Applications
HISAT2
-
Description
(Hierarchical Indexing for Spliced Alignment of Transcripts) a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome). HISAT2 is a successor to both HISAT and TopHat2.
-
Usage
To list all executables provided by HISAT2, run:$ biogrids-list hisat2 -
Installation
Use the following command to install this title with the CLI client:$ biogrids-cli install hisat2Available operating systems: Linux 64, OS X INTEL -
Primary Citation*
D. Kim and B. L. &. S. L. Salzberg. 2015. HISAT: a fast spliced aligner with low memory requirements. Nature Methods. 12(4): 357-360.
-
*Full citation information available through
-
-
Keywords
High-throughput sequencing, RNA-Sequencing, Spliced Read Alignment
-
Default Versions
Linux 64: 2.1.0 (75.6 MB)
OS X INTEL: 2.1.0 (35.9 MB) -
Other Versions
Linux 64:
2.0.1-beta (89.8 MB) -
OS X INTEL:
2.0.1-beta (25.3 MB)
Developers
Daehwan Kim, Steven Salzberg