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  • Description

    (Hierarchical Indexing for Spliced Alignment of Transcripts) a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome). HISAT2 is a successor to both HISAT and TopHat2.

  • Usage

    To list all executables provided by HISAT2, run: $ biogrids-list hisat2 Copy to clipboard
  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install hisat2 Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    D. Kim and B. L. &. S. L. Salzberg. 2015. HISAT: a fast spliced aligner with low memory requirements. Nature Methods. 12(4): 357-360.

    • *Full citation information available through