Supported Applications


  • Description

    (Hierarchical Indexing for Spliced Alignment of Transcripts) a fast and sensitive alignment program for mapping next-generation sequencing reads (both DNA and RNA) against the general human population (as well as against a single reference genome). HISAT2 is a successor to both HISAT and TopHat2.

  • Primary Citation*

    D. Kim and B. L. &. S. L. Salzberg. 2015. HISAT: a fast spliced aligner with low memory requirements. Nature Methods. 12(4): 357-360.

    • *Full citation information available through