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Supported Applications


  • Description

    A tool for mapping and performing quality control on Hi-C data

  • Usage

    To list all executables provided by HiCUP, run: $ biogrids-list hicup Copy to clipboard
  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install hicup Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    S. Wingett, P. Ewels, M. Furlan-Magaril, T. Nagano, S. Schoenfelder, P. Fraser, and S. Andrews. 2015. HiCUP: pipeline for mapping and processing Hi-C data. F1000Research. 4: 1310.

    • *Full citation information available through

  • Keywords


  • Default Versions

    Linux 64:  0.8.2 (880.8 MB)
    OS X INTEL:  0.8.2 (658.8 MB)