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  • Description

    a framework that integrates optical mapping, high-throughput chromosome conformation capture (Hi-C), and whole genome sequencing to systematically detect SVs in a variety of normal or cancer samples and cell lines.

  • Usage

    To list all executables provided by hic_breakfinder, run: $ biogrids-list hic_breakfinder Copy to clipboard
  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install hic_breakfinder Copy to clipboard Available operating systems: Linux 64
  • Primary Citation*

    J. R. Dixon, J. Xu, Dileep V, Y. Zhan, F. Song, V. T. Le, G. G. Yardımcı, A. Chakraborty, D. V. Bann, Y. Wang, R. Clark, L. Zhang, H. Yang, T. Liu, S. Iyyanki, L. An, C. Pool, T. Sasaki, J. C. Rivera-Mulia, H. Ozadam, B. R. Lajoie, R. Kaul, M. Buckley, K. Lee, M. Diegel, D. Pezic, C. Ernst, S. Hadjur, D. T. Odom, J. A. Stamatoyannopoulos, J. R. Broach, R. C. Hardison, F. Ay, W. S. Noble, J. Dekker, D. M. Gilbert, and Y. F.. 2018. Integrative detection and analysis of structural variation in cancer genomes. Nat Genet.. 50(10): 1388-1398.

    • *Full citation information available through