Supported Applications

hic_breakfinder

  • Description

    A framework that integrates optical mapping, high-throughput chromosome conformation capture (Hi-C), and whole genome sequencing to systematically detect SVs in a variety of normal or cancer samples and cell lines.

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install hic_breakfinder Copy to clipboard
  • Primary Citation*

    J. R. Dixon, J. Xu, Dileep V, Y. Zhan, F. Song, V. T. Le, G. G. Yardımcı, A. Chakraborty, D. V. Bann, Y. Wang, R. Clark, L. Zhang, H. Yang, T. Liu, S. Iyyanki, L. An, C. Pool, T. Sasaki, J. C. Rivera-Mulia, H. Ozadam, B. R. Lajoie, R. Kaul, M. Buckley, K. Lee, M. Diegel, D. Pezic, C. Ernst, S. Hadjur, D. T. Odom, J. A. Stamatoyannopoulos, J. R. Broach, R. C. Hardison, F. Ay, W. S. Noble, J. Dekker, D. M. Gilbert, and Y. F.. 2018. Integrative detection and analysis of structural variation in cancer genomes. Nat Genet.. 50(10): 1388-1398.


    • *Full citation information available through

  • Default Versions

    Linux 64:  1.0

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