Supported Applications
GRIDSS
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Description
GRIDSS is a module software suite containing tools useful for the detection of genomic rearrangements. GRIDSS includes a genome-wide break-end assembler, as well as a structural variation caller for Illumina sequencing data. GRIDSS calls variants based on alignment-guided positional de Bruijn graph genome-wide break-end assembly, split read, and read pair evidence.
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Usage
To list all executables provided by GRIDSS, run:$ biogrids-list gridss
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Installation
Use the following command to install this title with the CLI client:$ biogrids-cli install gridss
Available operating systems: Linux 64, OS X INTEL -
Primary Citation*
D. L. Cameron, J. Baber, C. Shale, J. E. Valle-Inclan, N. Besselink, A. van Hoeck, R. Janssen, E. Cuppen, P. Priestley, and A. T. Papenfuss. 2021. GRIDSS2: comprehensive characterisation of somatic structural variation using single breakend variants and structural variant phasing. Genome biology. 22(1): 202.
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*Full citation information available through
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Keywords
Genomics, Sequence Alignment Analysis, Structural Variant Analysis
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Default Versions
Linux 64:  2.11.1 (2.5 GB)
OS X INTEL:  2.11.1 (2.3 GB)