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GRIDSS

  • Description

    a module software suite containing tools useful for the detection of genomic rearrangements. GRIDSS includes a genome-wide break-end assembler, as well as a structural variation caller for Illumina sequencing data. GRIDSS calls variants based on alignment-guided positional de Bruijn graph genome-wide break-end assembly, split read, and read pair evidence.

  • Usage

    To list all executables provided by GRIDSS, run: $ biogrids-list gridss Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install gridss Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    D. L. Cameron, J. Baber, C. Shale, J. E. Valle-Inclan, N. Besselink, A. van Hoeck, R. Janssen, E. Cuppen, P. Priestley, and A. T. Papenfuss. 2021. GRIDSS2: comprehensive characterisation of somatic structural variation using single breakend variants and structural variant phasing. Genome biology. 22(1): 202.


    • *Full citation information available through

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