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GraphMap2

  • Description

    GraphMap2 update containins tuning of alignments specific for long RNA reads.

    GraphMap2 is a novel mapper targeted at aligning long, error-prone third-generation sequencing data. It is designed to handle Oxford Nanopore MinION 1d and 2d reads with very high sensitivity and accuracy, and also presents a significant improvement over the state-of-the-art for PacBio read mappers.

  • Usage

    To list all executables provided by GraphMap2, run: $ biogrids-list graphmap2 Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install graphmap2 Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    Sović I, M. Šikić, A. Wilm, S. N. Fenlon, S. Chen, and N. N.. 2016. Fast and sensitive mapping of error-prone nanopore sequencing reads with GraphMap. Nat Commun. 7: 11307.


    • *Full citation information available through

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