Supported Applications

GOR

  • Description

    a tool based on a genomic ordered relational architecture and allows analysis of large sets of genomic and phenotypic tabular data using a declarative query language, in a parallel execution engine. It is very efficient in a wide range of use-cases, including genome wide batch analysis, range-queries, genomic table joins of variants and segments, filtering, aggregation etc.

  • Usage Notes

    Test gorpipe with included test data:

    $ source /programs/biogrids.shrc

    $ gorpipe 'gor /programs/x86_64-linux/gor/2.2.0/tests/data/gor/dbsnp_test.gor | top 10';

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install gor Copy to clipboard
  • Primary Citation*

    H. Guðbjartsson, G. F. Georgsson, S. A. Guðjónsson, R. þ. Valdimarsson, J. H. Sigurðsson, S. K. Stefánsson, G. Másson, G. Magnússon, V. Pálmason, and K. Stefánsson. 2016. GORpipe: a query tool for working with sequence data based on a Genomic Ordered Relational (GOR) architecture. Bioinformatics.


    • *Full citation information available through

  • Keywords

    Genomics

  • Default Versions

    Linux 64:  2.2.0
    OS X INTEL:  2.2.0

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