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GNUVID

  • Description

    (GNU-based Virus IDentification) a Python3 program for Gene Novelty Unit-based Virus Identification for SARS-CoV-2. It ranks CDS nucleotide sequences in a genome fna file based on the number of observed exact CDS nucleotide matches in a public or private database. It was created to type SARS-CoV-2 genomes using a whole genome multilocus sequence typing (wgMLST) approach.

  • Usage

    To list all executables provided by GNUVID, run: $ biogrids-list gnuvid Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install gnuvid Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Citation Note

    Please cite the website: https://github.com/ahmedmagds/GNUVID

  • Keywords

    DNA-Sequencing

  • Default Versions

    Linux 64:  2.2 (693.6 MB)
    OS X INTEL:  2.2 (664.8 MB)

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