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gget

  • Description

    is a free, open-source command-line tool and Python package that enables efficient querying of genomic databases. gget consists of a collection of separate but interoperable modules, each designed to facilitate one type of database querying in a single line of code.

  • Usage

    To list all executables provided by gget, run: $ biogrids-list gget Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install gget Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    L. Luebbert and L. Pachter. 2023. Efficient querying of genomic reference databases with gget. Bioinformatics (Oxford, England). 39(1).


    • *Full citation information available through

  • Keywords

    Genomics, High-throughput sequencing

  • Default Versions

    Linux 64:  0.30.3 (736.7 MB)
    OS X INTEL:  0.30.3 (589.1 MB)

  • Other Versions

      Linux 64:

      0.27.3 (3.5 GB) , 0.28.3 (3.6 GB)

    • OS X INTEL:

      0.27.3 (1.1 GB) , 0.28.3 (917.2 MB)
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