Supported Applications

gffcompare

  • Description

    compares and evaluates the accuracy of RNA-Seq transcript assemblers (Cufflinks, Stringtie), collapses (merges) duplicate transcripts from multiple GTF/GFF3 files (e.g. resulted from assembly of different samples), and classifies transcripts from one or multiple GTF/GFF3 files as they relate to reference transcripts provided in a annotation file (also in GTF/GFF3 format).

  • Citation Note

    Please cite the following url:   https://ccb.jhu.edu/software/stringtie/gffcompare.shtml

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