Supported Applications

gffcompare

Description

compares and evaluates the accuracy of RNA-Seq transcript assemblers (Cufflinks, Stringtie), collapses (merges) duplicate transcripts from multiple GTF/GFF3 files (e.g. resulted from assembly of different samples), and classifies transcripts from one or multiple GTF/GFF3 files as they relate to reference transcripts provided in a annotation file (also in GTF/GFF3 format).
Usage
To list all executables provided by gffcompare, run: $ biogrids-list gffcompare
Installation
Use the following command to install this title with the CLI client: $ biogrids-cli install gffcompare Available operating systems: Linux 64, OS X INTEL
Citation Note

Please cite the following url: https://ccb.jhu.edu/software/stringtie/gffcompare.shtml

Keywords

Genomics, High-throughput sequencing, RNA-Seq Analysis
Default Versions

Linux 64: 0.10.4 (700.9 KB)
OS X INTEL: 0.10.4 (359.0 KB)
Developers

Geo Pertea