compares and evaluates the accuracy of RNA-Seq transcript assemblers (Cufflinks, Stringtie), collapses (merges) duplicate transcripts from multiple GTF/GFF3 files (e.g. resulted from assembly of different samples), and classifies transcripts from one or multiple GTF/GFF3 files as they relate to reference transcripts provided in a annotation file (also in GTF/GFF3 format).
InstallationUse the following command to install this title with the CLI client:
$ biogrids-cli install gffcompareAvailable operating systems: Linux 64, OS X INTEL
Citation NotePlease cite the following url: https://ccb.jhu.edu/software/stringtie/gffcompare.shtml
Linux 64:  0.10.4 (700.8 KB)
OS X INTEL:  0.10.4 (359.0 KB)