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fastp

  • Description

    is a tool designed to provide fast all-in-one preprocessing for FastQ files. This tool is developed in C++ with multithreading supported to afford high performance.

  • Usage

    To list all executables provided by fastp, run: $ biogrids-list fastp Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install fastp Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    S. Chen, Y. Zhou, Y. Chen, and G. J.. 2018. fastp: an ultra-fast all-in-one FASTQ preprocessor. Bioinformatics. 34(17): i884-i890.


    • *Full citation information available through

  • Keywords

    High-throughput sequencing

  • Default Versions

    Linux 64:  0.23.4 (26.0 MB)
    OS X INTEL:  0.23.4 (9.3 MB)

  • Other Versions

      Linux 64:

      0.20.0 (17.8 MB)

    • OS X INTEL:

      0.20.0 (736.9 KB)
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