Supported Applications
EPA-ng
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Description
EPA-ng is a complete rewrite of the Evolutionary Placement Algorithm (EPA), previously implemented in RAxML. It uses libpll and pll-modules to perform maximum likelihood-based phylogenetic placement of genetic sequences on a user-supplied reference tree and alignment.
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Usage
To list all executables provided by EPA-ng, run:$ biogrids-list epa-ng
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Installation
Use the following command to install this title with the CLI client:$ biogrids-cli install epa-ng
Available operating systems: Linux 64, OS X INTEL -
Primary Citation*
P. Barbera, A. M. Kozlov, L. Czech, B. Morel, D. Darriba, T. Flouri, and A. Stamatakis. 2019. EPA-ng: Massively Parallel Evolutionary Placement of Genetic Sequences. Systematic biology. 68(2): 365-369.
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*Full citation information available through
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Keywords
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Default Versions
Linux 64:  0.3.8 (21.6 MB)
OS X INTEL:  0.3.8 (7.9 MB)