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Cuttlefish

  • Description

    a fast, parallel, and very lightweight memory tool to construct the compacted de Bruijn graph from genome reference(s).

  • Usage

    To list all executables provided by Cuttlefish, run: $ biogrids-list cuttlefish Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install cuttlefish Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    J. Khan and R. Patro. 2021. Cuttlefish: fast, parallel and low-memory compaction of de Bruijn graphs from large-scale genome collections. Bioinformatics. 12(37): i177-i186.


    • *Full citation information available through

  • Keywords

    Genome Assembly

  • Default Versions

    Linux 64:  1.0.0 (25.5 MB)
    OS X INTEL:  1.0.0 (10.9 MB)

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