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Supported Applications

Cromwell

  • Description

    a Workflow Management System geared towards scientific workflows.

  • Usage

    To list all executables provided by Cromwell, run: $ biogrids-list cromwell Copy to clipboard

  • Usage Notes

    In the BioGrids environment cromwell can be run with the alias "cromwell" instead of typing the full java invocation:

    java -jar cromwell-29.jar run myWorkflow.wdl

    is replaced by

    cromwell run myWorkflow.wdl

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install cromwell Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    K. Voss, J. Gentry, and G. V. der Auwera. 2017. Full-stack genomics pipelining with GATK4 + WDL + Cromwell. f1000research.


    • *Full citation information available through

  • Keywords

    Workflow Management System

  • Default Versions

    Linux 64:  35 (242.3 MB)
    OS X INTEL:  35 (242.3 MB)

  • Developers

    Jeff Gentry

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