Supported Applications

Cromwell

Description

a Workflow Management System geared towards scientific workflows.
Usage Notes

In the BioGrids environment cromwell can be run with the alias "cromwell" instead of typing the full java invocation:

java -jar cromwell-29.jar run myWorkflow.wdl

is replaced by

cromwell run myWorkflow.wdl
Primary Citation*

K. Voss, J. Gentry, and G. V. der Auwera. 2017. Full-stack genomics pipelining with GATK4 + WDL + Cromwell. f1000research.
- *Full citation information available through