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covtobed

  • Description

    a tool to generate BED coverage tracks from BAM files. It reads one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.

  • Usage

    To list all executables provided by covtobed, run: $ biogrids-list covtobed Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install covtobed Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    G. Birolo and A. Telatin. 2022. BamToCov: an efficient toolkit for sequence coverage calculations. Bioinformatics (Oxford, England). 38(9): 2617-2618.


    • *Full citation information available through

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