Supported Applications
covtobed
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Description
covtobed is a tool to generate BED coverage tracks from BAM files. It reads one (or more) alignment files (sorted BAM) and prints a BED with the coverage. It will join consecutive bases with the same coverage, and can be used to only print a BED file with the regions having a specific coverage range.
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Usage
To list all executables provided by covtobed, run:$ biogrids-list covtobed
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Installation
Use the following command to install this title with the CLI client:$ biogrids-cli install covtobed
Available operating systems: Linux 64, OS X INTEL -
Primary Citation*
G. Birolo and A. Telatin. 2022. BamToCov: an efficient toolkit for sequence coverage calculations. Bioinformatics (Oxford, England). 38(9): 2617-2618.
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*Full citation information available through
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Keywords
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Default Versions
Linux 64:  1.3.5 (20.8 MB)
OS X INTEL:  1.3.5 (5.6 MB)