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Supported Applications

cooler

  • Description

    is a support library for a sparse, compressed, binary persistent storage format, also called cooler, used to store genomic interaction data, such as Hi-C contact matrices.

  • Usage

    To list all executables provided by cooler, run: $ biogrids-list cooler Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install cooler Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    N. Abdennur and L. A. Mirny. 2020. Cooler: scalable storage for Hi-C data and other genomically labeled arrays. Bioinformatics (Oxford, England). 36(1): 311-316.


    • *Full citation information available through

  • Keywords

    Hi-C

  • Default Versions

    Linux 64:  0.8.11 (587.6 MB)
    OS X INTEL:  0.8.11 (533.5 MB)

  • Other Versions

      Linux 64:

      0.8.9 (490.8 MB)

    • OS X INTEL:

      0.8.9 (417.0 MB)
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