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Supported Applications

CoNIFER

  • Description

    uses exome sequencing data to find copy number variants (CNVs) and genotype the copy-number of duplicated genes.

  • Usage

    To list all executables provided by CoNIFER, run: $ biogrids-list conifer Copy to clipboard

  • Usage Notes

    BioGrids CONIFER supplies the script conifer.py as an executable. It may be run fromo the command line directly:

    [e2]$ conifer.py usage: CoNIFER [-h] [--version] {rpkm,analyze,export,plot,call,plotcalls} ... CoNIFER: error: too few arguments

    The documentation for CONIFER indicates calling python with the script name as an argument:

    python conifer.py

    Anywhere this is indicated a BioGrids user can simply call conifer.py directly instead.

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install conifer Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    N. Krumm, P. H. Sudmant, A. Ko, and e. al.. 2012. Copy number variation detection and genotyping from exome sequence data. 22(8): 1525-1532.


    • *Full citation information available through

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