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CNVkit

  • Description

    a command-line toolkit and Python library for detecting copy number variants and alterations genome-wide from high-throughput sequencing.

  • Usage

    To list all executables provided by CNVkit, run: $ biogrids-list cnvkit Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install cnvkit Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    E. Talevich, A. H. Shain, T. Botton, and B. BC.. 2016. CNVkit: Genome-Wide Copy Number Detection and Visualization from Targeted DNA Sequencing. PLoS Comput Biol. 12(4).


    • *Full citation information available through

  • Keywords

    Genomics

  • Default Versions

    Linux 64:  0.9.7 (875.9 MB)
    OS X INTEL:  0.9.7 (877.5 MB)

  • Other Versions

      Linux 64:

      0.9.6 (1.2 GB)

    • OS X INTEL:

      0.9.6 (1.3 GB)
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