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Circlator

  • Description

    Circlator is a tool to circularize genome assemblies. The input is a genome assembly in FASTA format and corrected PacBio or nanopore reads in FASTA or FASTQ format. Circlator will attempt to identify each circular sequence and output a linearised version of it. It does this by assembling all reads that map to contig ends and comparing the resulting contigs with the input assembly.

  • Usage

    To list all executables provided by Circlator, run: $ biogrids-list circlator Copy to clipboard

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install circlator Copy to clipboard Available operating systems: Linux 64, OS X INTEL

  • Primary Citation*

    M. Hunt, N. D. Silva, T. D. Otto, J. Parkhill, J. A. Keane, and H. SR.. 2015. Circlator: automated circularization of genome assemblies using long sequencing reads. Genome Biol.. 29(16): 294.


    • *Full citation information available through

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