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Supported Applications

Cell Ranger

  • Description

    a set of analysis pipelines that process Chromium single-cell RNA-seq output to align reads, generate feature-barcode matrices and perform clustering and gene expression analysis.

  • Usage

    To list all executables provided by Cell Ranger, run: $ biogrids-list cellranger Copy to clipboard
  • Usage Notes

    This installation is provided by SBGrid and is not supported by 10x Genomics, but the 10x Genomics EULA still applies: https://support.10xgenomics.com/docs/license

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install cellranger Copy to clipboard Available operating systems: Linux 64
  • Primary Citation*

    G. X. Zheng, J. M. Terry, P. Belgrader, P. Ryvkin, Z. W. Bent, R. Wilson, S. B. Ziraldo, T. D. Wheeler, G. P. McDermott, J. Zhu, M. T. Gregory, J. Shuga, L. Montesclaros, J. G. Underwood, D. A. Masquelier, S. Y. Nishimura, M. Schnall-Levin, P. W. Wyatt, C. M. Hindson, R. Bharadwaj, A. Wong, K. D. Ness, L. W. Beppu, H. J. Deeg, C. McFarland, K. R. Loeb, W. J. Valente, N. G. Ericson, E. A. Stevens, J. P. Radich, T. S. Mikkelsen, B. J. Hindson, and J. H. Bielas. 2017. Massively parallel digital transcriptional profiling of single cells. Nature communications. 8: 14049.

    • *Full citation information available through

  • Keywords

    scRNA-Seq Analysis

  • Default Versions

    Linux 64:  8.0.1 (1.9 GB)

  • Other Versions

      Linux 64:

      2.1.1 (1.6 GB) , 4.0.0 (2.2 GB) , 6.0.1 (2.4 GB) , 6.1.2 (2.1 GB) , 7.1.0 (1.8 GB)