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cell2location

  • Description

    Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)

  • Usage

    To list all executables provided by cell2location, run: $ biogrids-list cell2location Copy to clipboard

  • Usage Notes

    BioGrids cell2location provides two callable programs:

    jupyter.cell2location

    python.cell2location

    The jupyter notebook contains a kernel for cell2location.

  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install cell2location Copy to clipboard Available operating systems: Linux 64

  • Primary Citation*

    Kleshchevnikov V, A. Shmatko, E. Dann, A. Aivazidis, H. W. King, T. Li, R. Elmentaite, A. Lomakin, Kedlian V, A. Gayoso, M. S. Jain, J. S. Park, L. Ramona, E. Tuck, A. Arutyunyan, R. Vento-Tormo, M. Gerstung, L. James, O. Stegle, and O. A. Bayraktar. 2022. Cell2location maps fine-grained cell types in spatial transcriptomics. Nature biotechnology. 40(5): 661-671.


    • *Full citation information available through

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