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Supported Applications


  • Description

    a set of tools for the time-efficient analysis of Bisulfite-Seq (BS-Seq) data. Bismark performs alignments of bisulfite-treated reads to a reference genome and cytosine methylation calls at the same time.

  • Usage

    To list all executables provided by Bismark, run: $ biogrids-list bismark Copy to clipboard
  • Installation

    Use the following command to install this title with the CLI client: $ biogrids-cli install bismark Copy to clipboard Available operating systems: Linux 64, OS X INTEL
  • Primary Citation*

    F. Krueger and S. R. Andrews. 2011. Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications. Bioinformatics. 27(11): 1571-1572.

    • *Full citation information available through

  • Keywords


  • Default Versions

    Linux 64:  0.24.2 (420.9 MB)
    OS X INTEL:  0.24.2 (279.0 MB)

  • Other Versions

      Linux 64:

      0.20.0 (17.1 MB)
    • OS X INTEL:

      0.20.0 (17.1 MB)
  • Developers

    Felix Krueger